Publications

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Journal Article
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts., Björkholm, Patrik, Daniluk Paweł, Kryshtafovych Andriy, Fidelis Krzysztof, Andersson Robin, and Hvidsten Torgeir R. , Bioinformatics (Oxford, England), 2009 May 15, Volume 25, Issue 10, p.1264-70, (2009)
Two novel presenilin 1 gene mutations connected with frontotemporal dementia-like clinical phenotype: genetic and bioinformatic assessment., Zekanowski, Cezary, Golan Maciej P., Krzyśko Krystiana A., Lipczyńska-Łojkowska Wanda, Filipek Sławomir, Kowalska Anna, Rossa Grzegorz, Pepłońska Beata, Styczyńska Maria, Maruszak Aleksandra, et al. , Experimental neurology, 2006 Jul, Volume 200, Issue 1, p.82-8, (2006)
Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment., Cieplak, Marek, Filipek Sławomir, Janovjak Harald, and Krzyśko Krystiana A. , Biochimica et biophysica acta, 2006 Apr, Volume 1758, Issue 4, p.537-44, (2006)
Protein structure prediction center in CASP8., Kryshtafovych, Andriy, Krysko Oleh, Daniluk Paweł, Dmytriv Zinoviy, and Fidelis Krzysztof , Proteins, 2009, Volume 77 Suppl 9, p.5-9, (2009)
A novel method to compare protein structures using local descriptors., Daniluk, Paweł, and Lesyng Bogdan , BMC bioinformatics, 08/2011, Volume 12, p.344, (2011)
New tools and expanded data analysis capabilities at the Protein Structure Prediction Center., Kryshtafovych, Andriy, Prlic Andreas, Dmytriv Zinoviy, Daniluk Paweł, Milostan Maciej, Eyrich Volker, Hubbard Tim, and Fidelis Krzysztof , Proteins, 2007, Volume 69 Suppl 8, p.19-26, (2007)
Molecular models of the interface between anterior pharynx-defective protein 1 (APH-1) and presenilin involving GxxxG motifs., Jozwiak, Krzysztof, Krzyśko Krystiana A., Bojarski Lukasz, Gacia Magdalena, and Filipek Sławomir , ChemMedChem, 2008 Apr, Volume 3, Issue 4, p.627-34, (2008)
Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space., Strömbergsson, Helena, Daniluk Paweł, Kryshtafovych Andriy, Fidelis Krzysztof, Wikberg Jarl E. S., Kleywegt Gerard J., and Hvidsten Torgeir R. , Journal of chemical information and modeling, 2008 Nov, Volume 48, Issue 11, p.2278-88, (2008)
A genistein derivative, ITB-301, induces microtubule depolymerization and mitotic arrest in multidrug-resistant ovarian cancer., Ahmed, Ahmed Ashour, Goldsmith Juliet, Fokt Izabela, Le Xiao-Feng, Krzyśko Krystiana A., Lesyng Bogdan, Bast Robert C., and Priebe Waldemar , Cancer chemotherapy and pharmacology, 10/2011, Volume 68, Issue 4, p.1033-44, (2011)
Extraction of biomedical traits for patients with Amyotrophic Lateral Sclerosis using parallel and hierarchical classifiers, Jóźwik, Adam, Sokołowska Beata, Niebroj-Dobosz Irena, and Janik P. , International Journal of Biometrics, Volume 3, Number 1, p.85–94, (2011)
A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface., Filipek, Sławomir, Krzyśko Krystiana A., Fotiadis Dimitrios, Liang Yan, Saperstein David A., Engel Andreas, and Palczewski Krzysztof , Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, 2004 Jun, Volume 3, Issue 6, p.628-38, (2004)
CASP6 data processing and automatic evaluation at the protein structure prediction center., Kryshtafovych, Andriy, Milostan Maciej, Szajkowski Lukasz, Daniluk Paweł, and Fidelis Krzysztof , Proteins, 2005, Volume 61 Suppl 7, p.19-23, (2005)
Activities of Topoisomerase I in Its Complex with SRSF1., Ishikawa, Takao, Krzyśko Krystiana A., Kowalska-Loth Barbara, Skrajna Aleksandra M., Czubaty Alicja, Girstun Agnieszka, Cieplak Maja K., Lesyng Bogdan, and Staron Krzysztof , Biochemistry, 02/2012, (2012)